Tell the buyer about the flooding. If you sell without telling them, you can be held responsible later. There are two legal reasons.
One is the seller's responsibility. The Civil Code says that if the delivered house does not match the contract, the buyer can ask for repairs and more (Article 562). This is called liability for non-conformity with the contract (the seller's duty to fix defects found after handover). The buyer must notify the seller within one year of learning of the defect. But if the seller knew of the defect at handover, the one-year limit does not apply (Article 566).
Civil Code Article 572 also says this: "Even if a special agreement excludes warranty liability, the seller cannot be released from liability for facts the seller knew and did not disclose (omitted)." In other words, even if you sell with a promise of no liability for later defects, you remain liable for flooding you knew about and kept quiet about.
The other is a rule for real estate companies. When you sell through a brokerage (a real estate company finds the buyer and sells for you), Article 35 of the Real Estate Brokerage Act requires the company to have a licensed real estate transaction agent (a person with the national qualification for property deals) explain key matters in writing before the contract is made. If the house is shown on the municipal flood hazard map (a map of areas at risk of flooding), that location is one of the matters to explain (Enforcement Regulations, Article 16-4-3). This is separate from whether the house flooded in the past.
Article 47 of the same law forbids a real estate company from "intentionally failing to tell a fact, or telling an untrue fact" about matters that greatly affect the buyer's decision. In other words, a real estate company must not stay silent about important matters it knows, or tell lies. If the seller discloses the flooding, the company can also explain correctly.
What to tell: when it happened (August 2026), how high the water came (below or above the floor, and how many cm above the floor), what you repaired and what you did not, and the disaster damage certificate category. Write it on paper and hand it over to avoid misunderstandings.
If you are unsure how much to disclose, or what it means in your case, ask a lawyer. The Toyama support package lists a free legal consultation by the Toyama Bar Association. We do not give legal judgments on individual cases.